Data · dataset · 2020
Aquaporins in Pearl Millet: genomic, coding and protein sequences
Listed in DataSuds
Pearl millet (Pennisetum glaucum (L) R. Br.) is a key cereal for food security in arid and semi-arid regions but its yield is increasingly threatened by water stress.
Description
Physiological mechanisms consisting in saving water or increasing water use efficiency can alleviate that stress. Aquaporins (AQP) are water channels contributing to plant hydraulic balance that are supposedly involved in these mechanisms by mediating root water transport.
However, AQP remain largely uncharacterized in pearl millet. We developed genomic approaches to identify the entire AQP family in pearl millet. We identified and annotated 33 AQP genes in pearl millet among which ten encoded Plasma Membrane Intrinsic Proteins (PIP).
Read the rest (1 more)
The genomic, coding and protein sequences of the identified AQP are available in this dataset. Furthermore, Phyre2 web-based service was used to performed modeling prediction of the pearl millet PIP based on homologies with aquaporin with known structure. This analysis generated Protein Data Bank (PDB) files for each PIP that are also available in this dataset.
Links
Where it is published
- Dataverse dataset page dataverse.ird.fr/dataset.xhtml?persistentId=doi%3A10.23708%2FWVCG5O ↗
landing page · from dataverse ird fr
- DOI doi.org/10.23708/wvcg5o ↗
DOI / persistent id · from dataverse ird fr
Catalogue records · 1
- Dataverse API dataverse.ird.fr/api/datasets/:persistentId/?persistentId=doi%3A10.23708%2FWVCG… ↗
metadata API · from dataverse ird fr
Topics
- Stated by source
- Agricultural Sciences
- From keywords
- Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataSuds | doi:10.23708/WVCG5O | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:agricultural-sciences | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /subjects |
| created_date | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | |
| description | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /description |
| publication_date | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | |
| title | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | /name |
| updated_date | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 | |
| version_label | source · dataverse ird fr | connector:dataverse_ird_fr@1.0.0 |