Data and codes for manuscript: Environmental and functional niches complement phylogeny

Phylogenetic constraints on ITERs --------------<br>## =========================================================================#<br>source('./src/2_phylgenetic_signal/phylosig_signals.R') # as a reference<br>source('./src/2_phylgenetic_signal/brm_signal_across_level.R') # run once<br>source('./src/2_phylgenetic_signal/brm_environment_traits.R') # run once</pre><p dir="ltr"># plot figures</p><p dir="ltr">source('./src/2_phylgenetic_signal/Figure_across_levels.R') # run once</p><p dir="ltr">source('./src/2_phylgenetic_signal/Figure_brm_lambda_and_tree_plot.R')</p><p dir="ltr">source('./src/2_phylgenetic_signal/Figure_of_all_lambda_in_sub_clades.R')</p><p><br></p><p>## =========================================================================#</p><p dir="ltr"># 3.

The effects of potential drivers on ITERs -------------------</p><p>## =========================================================================#</p><p dir="ltr">#* the effects of trait plasticity and functional niche under phylogenetic controls. </p><p dir="ltr">source('./src/3_Combined_analysis/Figure_main_driver_effects_brm.R')</p><p dir="ltr">source('./src/3_Combined_analysis/Relative_contribution_brm.R')</p><p dir="ltr">source('./src/3_Combined_analysis/summary_brm.R')</p><p><br></p><p><br></p><p>## =========================================================================#</p><p dir="ltr"># 4.

Supplementary: -------------------</p><p>## =========================================================================#</p><p dir="ltr">#* the effects of trait plasticity and functional niche under phylogenetic controls. </p><p dir="ltr"># check the rhat and show the trace plot</p><p dir="ltr">source('./src/4_supplementary/rhat_and_trace_plot.R')</p><p dir="ltr">source('./src/4_supplementary/morans_I.R')</p><p dir="ltr">source('./src/4_supplementary/correlation_of_matrix.R')</p><p dir="ltr">source('./src/4_supplementary/scatter_regression_for_brm_effects.R')</p><p dir="ltr"><br></p><p><br></p>