Omics · study · 2026
Multi-tissue whole-genome bisulfite sequencing DNA methylation profiling of red-spotted grouper (Epinephelus akaara)
Listed in NCBI GEO
Red-spotted grouper (Epinephelus akaara) is a high-value marine aquaculture species in East and Southeast Asia, yet genome-wide epigenomic resources for it remain scarce.
Description
Here we report a multi-tissue DNA methylation dataset generated by whole-genome bisulfite sequencing of four tissues (intestine, kidney, liver and spleen) of adult farmed E. akaara, with three biological replicates per tissue and 483 Gb of raw sequence in total.
All twelve libraries passed quality control (clean-read ratio 85.05-89.08%, mapping rate 83.90-87.70%, mean depth 27.80-37.34x, bisulfite conversion efficiency >= 99.63%).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE347nnn/GSE347872 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347872 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1521039 ncbi.nlm.nih.gov/bioproject/PRJNA1521039 ↗
project · from NCBI GEO
Topics
- Stated by source
- Methylation profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- DNA methylation profiling 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE347872 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:methylation-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].local:method:dna-methylation-profiling | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |