Data · dataset · 2026
Dataset of gut microbiome monitoring based on 16S rRNA amplicon sequencing for wildness training giant pandas (2018-2025)
Listed in ScienceDB
Description
This dataset is compiled from sequencing and analysis results of monitoring samples and consists of multiple structured data files, including the following three components:(1) Information of fecal samples collected from wildness training giant pandas: From September 2018 to December 2025, a total of 201 valid fecal samples were collected from 19 wild-trained giant pandas (15 females and 4 males), covering cub, sub-adult, and adult age stages (approximately 0.5 to 19 years old).
Each sample is annotated with the individual panda’s ID, date of birth, sex, sampling date, sample ID, sampling location, and corresponding sequencing batch.(2) Clean data of 16S rRNA high-throughput sequencing from gut microbiome of wildness training giant pandas: The V3–V4 region of the bacterial 16S rRNA gene was amplified from DNA samples, and libraries were constructed and sequenced on the Illumina NovaSeq platform.
Read the rest (2 more)
After removing barcodes and primer sequences from the raw data, high-quality Tags (Clean Data) were obtained through merging, low-quality truncation, and length filtering. The Clean Data are provided as compressed FASTQ files, with file names corresponding one-to-one to the sample IDs in the fecal sample collection sheet. A total of 201 Clean Data files are included.(3) Taxonomic annotation of gut microbiome from wildness training giant pandas: Using QIIME software, operational taxonomic units (OTUs) were clustered at 97% similarity, and taxonomic annotation was performed based on representative OTU sequences.
A total of 201 samples were annotated in seven sequencing batches. The results show that the gut bacterial community of wild-trained giant pandas comprises 51 phyla and 805 genera.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.cjaeb.00047 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Evolutionary biology 68% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.cjaeb.00047 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (68%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |