Data · dataset · 2026
Data collection of microbiome and metabolome of Arabiopsis thaliana grown in soil or iron deficiency
Listed in ScienceDB
Col-0 and 16 mutant plants post six weeks of growth on agricultural soil under short-day conditions (10 h light/14 h dark) at 22 °C. Roots from Arabidopsis thaliana plants were harvested 6 weeks post plantation in agricultural soil for 16S rRNA gene amplicon sequencing.
Description
Plant roots and corresponding bulk soil samples were homogenized before DNA extraction. DNA was extracted using a FastDNA SPIN Kit for soil (MP Biomedicals) according to product instructions. 16S rRNA genes were amplified with barcode primers (799F-1193R) targeting the variable region V5-V7.
The 16S rRNA gamplicon sequences were processed using QIIME 1.9.1, USEARCH 10.0, and in-house scripts.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.38220 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Plant biochemistry 76% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.38220 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:field:310802 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (76%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |