Text · dataset · 2022
CellFinder
Listed in Hugging Face Datasets
The CellFinder project aims to create a stem cell data repository by linking information from existing public databases and by performing text mining on the research literature.
Description
The first version of the corpus is composed of 10 full text documents containing more than 2,100 sentences, 65,000 tokens and 5,200 annotations for entities. The corpus has been annotated with six types of entities (anatomical parts, cell components, cell lines, cell types, genes/protein and species) with an overall inter-annotator agreement around 80%.
See: informatik.hu-berlin.de/de/forschung/gebiete/wbi/resources/cellfinder/
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/bigbio/cellfinder ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/bigbio/cellfinder ↗
metadata API · from Hugging Face
Topics
- Stated by source
- text
- From keywords
- Computer Science & AI
- Inferred from text
- Text 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | bigbio/cellfinder | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].hf_modality:text | source · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:text | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license_text | source · Hugging Face | connector:huggingface@1.0.0 | |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |