Omics · study · 2026
Intermittent hypoxia: changing energy metabolism patterns of golden pompano is beneficial for coping with hypoxia
Listed in NCBI GEO
It is currently believed that one of the most severe abiotic stresses in the aquatic environment is hypoxia.
Description
However, dissolved oxygen in water is not always at the low concentrations that cause hypoxia, but it is possible to exhibit a state of intermittent fluctuation. The study used a low oxygen concentration (1.8 mg/L) to treat golden pompano (Trachinotus blochii) for 28 days (intermittent hypoxia, 2 hours per day) and systematically evaluated its metabolism indexes.
RNA-seq was used to construct a regulatory network to further elucidate the transcriptional regulation of the golden pompano metabolism under intermittent hypoxia. We found that the liver lactic acid content, as well as pyruvate kinase, hexokinase, and phosphofructokinase activities were elevated during the first 7 days, suggesting that anaerobic glycolysis was enhanced during the preceding period. In addition, the triglyceride, lipoprotein lipase, and carnitine palmitoyltransferase-1 levels in the liver were elevated after 14 days, suggesting that lipid utilisation was activated after 14 days.
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At the same time, intermittent hypoxia increases the activity of aspartate aminotransferase and alanine aminotransferase in the liver, decreases total plasma protein and amino acid levels, and enhances the metabolism of protein and amino acids. Decreased levels of oxidative stress and LOEcrit (the O2 tension for loss of equilibrium) in the golden pompano after 28 days of intermittent hypoxia. Transcriptome analysis showed that the fatty acid metabolism, PPAR signalling pathway, fatty acid degradation, D-amino acid metabolism, and cholesterol metabolism pathway were activated.
These results suggest that intermittent hypoxia improves the metabolic pattern of golden pompano, enhances its ability to tolerate hypoxia, and promotes its adaptation to hypoxia environment.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE277nnn/GSE277111 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE277111 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1160812 ncbi.nlm.nih.gov/bioproject/PRJNA1160812 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE277111 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |