Table · dataset · 2026
Raw sequencing data for Hernandez-Beltran et al (2026) "Forging an evolutionary individual from separate replicators"
Listed in Edmond
This upload contains all raw sequencing data for the work "Forging an evolutionary individual from separate replicators" by Hernandez-Beltran and coworkers.
Description
DNA sequence data Folders and contents. Refer also to SI Table 2.
Folder: Ancestral_plasmids Files: MPB20347.gb = DNA sequence of the mCherry_kanMX4 “red” plasmid MPB20848.gb = DNA sequence of the eGFP_hphNT1 “green” plasmid YSCPLASM = DNA sequence of the 2μ plasmid Folder: E_coli with yeast-derived plasmid populations ONT Files: 11109129250_MPB42092_lib00026_WPS00069049_FAZ13349_1.fastq.gz = ONT sequence data derived from Plasmid DNA extracted from E. coli TOP10 into which the red and green plasmids had been transformed.
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This plasmid material was never passaged through yeast. 11109129250_MPB42093_lib00025_WPS00069049_FAZ13349_1.fastq.gz = ONT sequence data derived from Plasmid DNA extracted from ancestral yeast (MPB21532) and transformed into E. coli TOP10. 11109129250_MPB42094_lib00027_WPS00069049_FAZ13349_1.fastq.gz = ONT sequence data derived from Plasmid DNA extracted from derived yeast (cycle 70), Line 1 (MPB40417), and transformed into E. coli TOP10. 11109129250_MPB42095_lib00049_WPS00069049_FAZ13349_1.fastq.gz = ONT sequence data derived from Plasmid DNA extracted from derived yeast (cycle 70), Line 2 (MPB40418), and transformed into E. coli TOP10.
Folder: Yeast ONT Files: IC-A3608_MPB21532_libLAK3836_barcode07_FAB28259_a877d966_1.fastq.gz = ONT sequence data derived from genomic DNA extracted from MPB21532 (yeast BY4742 transformed with plasmids MPB20347 and MPB20848). IC-A3608_MPB40417_libLAK3837_barcode08_FAB28259_a877d966_1.fastq.gz = ONT sequence data derived from genomic DNA extracted from derived Line-1 populations at cycle 70 and sequenced (ONT). IC-A3608_MPB40418_libLAK3838_barcode09_FAB28259_a877d966_1.fastq.gz = ONT sequence data derived from genomic DNA extracted from derived Line-2 populations at cycle 70 and sequenced (ONT).
Folder: E_ coli with yeast derived plasmids_single clones ONT Files: MPB43209.rawdata.fastq.gz = ONT sequence data derived from plasmid DNA extracted from a single colony of E. coli TOP10 (MPB42094 – a derived Line 1 clone). Contains pChi with the FLP1 CDS Q389X mutation. MPB43214.rawdata.fastq.gz = ONT sequence data derived from plasmid DNA extracted from a single colony of E. coli TOP10 (MPB43214 – a derived Line 2 clone).
Contains the pChi with the FLP1 CDS frameshift at codon 78.
Links
Where it is published
- Dataverse dataset page edmond.mpg.de/dataset.xhtml?persistentId=doi%3A10.17617%2F3.H3IQWX ↗
landing page · from edmond mpdl mpg de
- DOI doi.org/10.17617/3.h3iqwx ↗
DOI / persistent id · from edmond mpdl mpg de
Catalogue records · 1
- Dataverse API edmond.mpg.de/api/datasets/:persistentId/?persistentId=doi%3A10.17617%2F3.H3… ↗
metadata API · from edmond mpdl mpg de
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Life Sciences · Materials Science · Medicine & Health · Ocean & Atmospheric Science · Physics · Social Science
- Inferred from text
- Evolutionary biology 73% · Sequencing 75% · Tabular 65%
Provenance · 2 source records, 25 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Edmond | doi:10.17617/3.H3IQWX | 5 d ago | JSON v1 |
| Edmond | doi:10.17617/3.H3IQWX | 3 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3104 | enrichment · edmond mpdl mpg de | taxonomy-embedding@1.0.0 | title+keywords+description (73%) |
| concepts[field].dataverse_subject:biology | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /subjects |
| concepts[field].dataverse_subject:biology | source · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:astronomy | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:computer-science-ai | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:economics-finance | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:engineering | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:humanities | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:materials-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:ocean-atmospheric | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:physics | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[field].local:field:social-science | mapping · edmond mpg de | connector:edmond_mpg_de@1.0.0 | /subjects |
| concepts[modality].local:modality:sequencing | enrichment · edmond mpdl mpg de | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · edmond mpdl mpg de | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| description | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /description |
| publication_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| title | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | /name |
| updated_date | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 | |
| version_label | source · edmond mpdl mpg de | connector:edmond_mpdl_mpg_de@1.0.0 |