Data · dataset · 2013
Pan Matrix data
Listed in DataCite
The file pan_matrix.txt is a huge table (tab-separated columns) where each row corresponds to a genome and each column to a domain sequences family.
Description
The rows are named by the BIOID-code, see map_ecoli.txt to look up the strain names. The columns are named Cluster 1, Cluster 2,...etc.
The corresponding Pfam-A domain sequence is given in the file cluster_info.txt (see below). In cell (i,j) in this table you find the number of occurrences that domain sequence j has in genome number i.
Links
Where it is published
- Repository landing page f1000.figshare.com/articles/dataset/Pan_Matrix_data/103707 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.103707 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Attribution 4.0 International creativecommons.org/licenses/by/4.0/legalcode ↗
license · from DataCite
- IsSupplementTo 10.12688/f1000research.1-19.v2 doi.org/10.12688/f1000research.1-19.v2 ↗
publication · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.103707 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.103707 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.103707 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |