Omics · study · 2026
Transcriptomic analysis of Bemisia tabaci MED adults exposed to soybean-derived lecithin
Listed in NCBI GEO
This study performed transcriptome sequencing of Bemisia tabaci MED adults (provided by Professor Youjun Zhang) treated with soybean-derived lecithin and a water control.
Description
Six samples (three per group) were sequenced, yielding a total of 42.74 Gb of clean data (ranging from 6.76 to 7.36 Gb per sample). Q30 bases ranged from 92.89% to 93.10%, and the average GC content was 41.20%.
Clean reads were mapped to the B. tabaci reference genome (NCBI Assembly ASM185493v1), with overall alignment rates ranging from 81.08% to 82.58%. Differential expression analysis (DESeq2) identified a total of 135 differentially expressed genes (DEGs) between the lecithin treatment and control groups.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE345nnn/GSE345400 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345400 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1520320 ncbi.nlm.nih.gov/bioproject/PRJNA1520320 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE345400 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |