Data · dataset · 2014
ALLMAPS supporting data: Medicago genome assembly
Listed in DataCite
Supporting data for ALLMAPS.
Description
The data set includes Medicago de novo genomic scaffolds, a combination of three maps including optical map, genetic map and synteny to chickpea. ALLMAPS was run to produce pseudomolecules based on these input data.
Weighting scheme for ALLMAPS was optical map (weight=3) > genetic map (weight=2) > synteny (weight=1). Command python -m jcvi.assembly.allmaps path Mt.bed scaffolds.fasta --links=40 Changelog - 6/7/2015, updated run.sh script
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/ALLMAPS_supporting_data_Medicago_genome_assem… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1057745 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1057745 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1057745 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1057745 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |