Excel · study · 2026
Transcriptome of primed and naïve-like state sheep embryonic stem cells
Listed in NCBI GEO
This project investigates the transcriptional profiles of sheep embryonic stem cells (sESCs) maintained in different culture conditions required for the maintenance of distinct pluripotent states.
Description
We derived primed-state sESCs from in vivo blastocysts using a chemically defined culture system and characterized their morphology and molecular features. When cultured in defined media previously shown to stabilize naïve pluripotency in human ESCs, sESCs adopted dome-shaped colony morphology, and exhibited features consistent with a naïve-like state.
RNA sequencing was performed on both primed and naïve-like sESCs to define gene expression differences, signaling pathway changes, and regulatory networks associated with pluripotency state transitions in sheep.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE311nnn/GSE311245 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311245 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1367550 ncbi.nlm.nih.gov/bioproject/PRJNA1367550 ↗
project · from NCBI GEO
- PubMed 41989105 pubmed.ncbi.nlm.nih.gov/41989105 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE311245 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |