Excel · study · 2026
Imeglimin modulates cholesterol biosynthesis and AMPK–ACC signaling in serum-stimulated rat aortic smooth muscle cells (RNA-seq)
Listed in NCBI GEO
Imeglimin is a first-in-class oral antidiabetic agent with reported mitochondrial and metabolic effects, but its direct actions on vascular smooth muscle cells remain incompletely understood.
Description
To explore transcriptomic changes associated with imeglimin exposure under mitogenic stimulation, rat aortic smooth muscle cells (RASMCs) were treated with imeglimin (2.5 mM) or vehicle from the time of seeding, serum-starved (0.2% FBS) for 48 h, and then switched to 10% FBS growth medium for 24 h while maintaining the same treatment.
Total RNA was extracted and subjected to stranded mRNA sequencing. Sequencing was performed on an Illumina NovaSeq X Plus platform (paired-end 150 bp; ~6 Gb per sample). Reads were quality-checked, trimmed, aligned to the rat rn6 reference genome, and quantified at the gene level.
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Downstream analyses were performed to identify differentially expressed genes and enriched pathways. This dataset provides a resource to investigate imeglimin-associated transcriptional programs, including lipid/cholesterol metabolic pathways, in proliferative VSMC conditions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE333nnn/GSE333627 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333627 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1471708 ncbi.nlm.nih.gov/bioproject/PRJNA1471708 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE333627 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |