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Structure · dataset · 2026

Investigation of Sulfur-related Influences on the Construction and Ring Opening of a Six-membered Cyclic Xanthate Derived from d‑Thymidine and CS<sub>2</sub>

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Description

With an interest in sustainable polymers derived from nucleoside building blocks, d-thymidine and carbon disulfide (CS<sub>2</sub>) were used as synthetic precursors to construct a <i>trans</i>-fused, 6,5-membered bicyclic xanthate, 3′,5′-cyclic <i>N</i><sup>3</sup>-(3-butenyl)-d-thymidine <i>trans</i> xanthate, for ring-opening polymerization (ROP) to yield stereo- and regiochemically defined homopolymer analogs of nucleic acids bearing thiocarbonate backbones.

Screenings for CS<sub>2</sub> insertion and succeeding cyclization to form the targeted monomer revealed two additional d-thymidine-derived cyclic moieties, including a xanthate and trithiocarbonate of <i>cis</i>-fused configurations, isolated in low yields. Therefore, ROP experiments using alkoxy-based initiators and organobase catalysts at room temperature and supporting DFT calculations for enthalpies of ring opening were extended to all three potential monomers, with only the <i>trans</i>-fused bicyclic xanthate undergoing ROP.

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Structural characterization by MALDI-TOF mass spectrometry and NMR spectroscopy of polymers obtained from ROPs of 3′,5′-cyclic <i>N</i><sup>3</sup>-(3-butenyl)-d-thymidine <i>trans</i> xanthate conducted at or somewhat below ambient temperatures indicated the presence of linear and cyclic species having primarily dimeric 5′,5′-trithiocarbonate-<i>co</i>-3′,3′-thionocarbonate connectivities from an alternating C–S and C–O cleavage pathway.

Other minor trithiocarbonate, xanthate, and thionocarbonate functionalities were proposed to arise from backbiting reactions and/or minor regiorandom cleavages. In contrast, ROPs conducted at reduced temperatures (≤ −20 or −40 °C depending on the organobase) achieved selective C–S cleavage to yield 3′,5′-xanthate-connected polymers of <i>N</i><sup>3</sup>-(3-butenyl)-d-thymidine with more structural similarity to native DNA.

These fundamental advances extend the breadth of nucleoside-derived polymers, emphasizing the influence of sulfur incorporation during monomer synthesis and upon subsequent ROPs, with outcomes being temperature-mediated alternating vs. unidirectional backbone compositional and structural regioregularity.

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Inferred from text
Density functional theory 65% · Mass spectrometry 75%
Provenance · 1 source records, 15 field assertions
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NCL Dataoai:figshare.com:article/340687972 d agoJSON v1
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