Omics · study · 2026
Transcriptome profiling of Erigeron breviscapus seedlings under different light intensity treatments
Listed in NCBI GEO
This study investigated the gene expression profiles of Erigeron breviscapus seedlings under five gradient light intensity levels with three biological replicates per group.
Description
Total RNA from leaf samples was subjected to mRNA sequencing (RNA-seq) to identify light-responsive genes and regulatory pathways. Raw sequencing reads have been deposited in the National Genomics Data Center (NGDC) Genome Sequence Archive (GSA) under accession number CRA036241.
This submission includes processed gene expression count matrix and FPKM matrix.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE347nnn/GSE347132 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347132 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1528721 ncbi.nlm.nih.gov/bioproject/PRJNA1528721 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE347132 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |