Omics · study · 2026
Diurnal Temperature Fluctuation Impact on Transcriptomic Profile in V. vinifera L. 'Reisling' and 'Cabernet Franc'
Listed in NCBI GEO
Description
The influence of temperatures on dormant bud gene expression was analyzed during an eighteen-day period in January 2016 (January 14th to 31st) when daily temperatures ranged between 13 ºC and -15 ºC. This study collection period captured three different natural consecutive temperature events that fluctuated above and below 0 ºC or remained constantly below 0 ºC. Dormant buds were collected from two different wine grapevine cultivars, Cabernet Franc’ and ‘Riesling’.
The buds were collected from Ravines Wine Cellar vineyards in Geneva, New York (42.843898, -77.003488. There were two 84-hour diurnal cycles (DC) that included temperatures fluctuating above and below 0 ºC (DC1: Jan 14 to Jan 17; DC2: Jan 24 to Jan 27) (Figure 1, Table 1). In DC1 and DC2, samples were collected 3 times/day, during the dark periods (6:00 and 18:00) and once in the light at warmest part of the day (14:00).
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The DC1 and DC2 periods bracketed four days (96 h) of constant daily temperatures below 0 ºC (Jan 18 to Jan 22). This constant below 0 ºC period was sampled in the light period only (14:00) (Figure 2, Table 1). Three replicate bud samples, each consisting of 3 buds per replicate were collected, each replicate from a separate vine for Reisling and Cabernet franc.
Bud samples were immediately plunged into liquid nitrogen and stored at -80 ºC until RNA extraction.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337151 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337151 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1478002 ncbi.nlm.nih.gov/bioproject/PRJNA1478002 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337151 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:tabular | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |