Data · dataset · 2014
SMASH – semi-automatic muscle analysis using segmentation of histology: a MATLAB application
Listed in DataCite
SMASH is composed of a set of functions enabling the user analyze aspects of histological muscle sections.
Description
Image segmentation: identifies potential muscle fibers. Fiber filter: removes non fiber elements.
Fiber properties computes parameters related to fiber size. Fiber type: determines which fibers are positively stained within an image. Central nucleation: determines which fibers have central nuclei within an image.
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Object counter: identifies non fiber objects within an image. SMASH Stand Alone requires MATLAB Compiler Runtime (MCR) version R2014a (8.3) which is freely available from Mathworks (mathworks.com/products/compiler/mcr/). SMASH App requires MATLAB version R2014a (8.3) or later with the Image Processing Toolbox.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/SMASH_semi_automatic_muscle_analysis_using_se… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1247634 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1247634 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1247634 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- Inferred from text
- Image 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1247634 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |