Omics · study · 2026
Genomic characterization of a novel victorivirus detected in a sample derived from a human-biting tick in Japan
Listed in NCBI GEO
Surveillance of tick-associated viruses may contribute to our understanding of viral diversity and evolution.
Description
We identified a novel viral sequence from a sample derived from a human-biting tick, Amblyomma testudinarium, in Japan. The viral sequence that we found was 4621 bp in length with 54% GC content.
Two major open reading frames were predicted to encode a putative coat protein (CP) and an RNA-dependent RNA polymerase (RdRp), respectively. Two ORFs overlapped at the tetranucleotides, AUGA. The C-terminal region of putative CP was enriched in alanine, glycine, and proline residues.
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All these features are similar to those commonly observed in victoriviruses. Phylogenetic analyses based on the amino acid sequences of the putative CP and RdRp showed that the virus belongs to the genus Victorivirus of the family Pseudototiviridae. Based on these, we designated this putative virus as Amblyomma testudinarium-associated victorivirus 1 (ATaVV1).
These findings expand current knowledge of hidden diversity of virome associated with tick-related samples.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327823 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327823 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1452860 ncbi.nlm.nih.gov/bioproject/PRJNA1452860 ↗
project · from NCBI GEO
- PubMed 42333985 pubmed.ncbi.nlm.nih.gov/42333985 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327823 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |