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Data · dataset · 2024

OncoTUM models

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OncoTUM models This repository hosts pretrained neural network models for OncoTUM, a key software package within the umbrella project Onco* for modelling and numerical simulations of tumours.

Description

OncoTUM is designed to facilitate tumour segmentations from medical images, leveraging state-of-the-art deep learning techniques. Purpose The pretrained models in this repository are required for using the inference function of OncoTUM.

These models have been trained on relevant datasets (BraTS 2020) to ensure high accuracy and performance in tumor segmentation and its classification. Usage To utilise the inference functionality of OncoTUM, download the appropriate pretrained models from this repository and ensure they are correctly linked to the OncoTUM software package. Detailed instructions for setup and integration can be found in the OncoTUM documentation.

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Content In order to remain with most possible flexibility, the modality agnostic implementation allows to perform segmentation with a subset of the gold standard modalities. Brain tumour segmentation Full modal model: trained to all gold standard modalities (t1, t1gd, t2, flair). Single modality model: trained to single modalities of the gold standard.

Null image: Empty image for training.

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Stated by source
Engineering
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Image 75%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
DaRUSdoi:10.18419/DARUS-464712 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[disease].local:disease:cancermapping · darus uni stuttgart devocabulary-mapper@1.0.0keywords['Tumour']
concepts[field].anzsrc:field:461104mapping · darus uni stuttgart devocabulary-mapper@1.0.0keywords['Neural Networks']
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concepts[field].local:field:engineeringmapping · darus uni stuttgart deconnector:darus_uni_stuttgart_de@1.0.0/subjects
concepts[modality].local:modality:imageenrichment · darus uni stuttgart dekeyword-concept-rules@1.0.0title+description (75%)
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descriptionsource · darus uni stuttgart deconnector:darus_uni_stuttgart_de@1.0.0/description
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