Data · dataset · 2025
Molecular Dynamics Simulations of Linear Ubiquitin Dimers
Listed in RADAR and RADAR4Memory — shown once because both records carry DOI 10.48606/rtda48r76y1e71cc
This dataset contains trajectory data of linear linked ubiquitin dimers (diUb).
Description
Each simulation (12x) is 50 ns long and was started from an open (ubiquitin moieties are separated) conformation to give 60 000 samples every 10 ps. Simulations were performed using the GROMACS simulation package v.5 and the GROMOS 54a7 force field.
Links
Where it is published
- DOI doi.org/10.48606/rtda48r76y1e71cc ↗
DOI / persistent id · from radar service eu de
Catalogue records · 1
- OAI-PMH record radar-service.eu/oai/OAIHandler?verb=GetRecord&metadataPrefix=oai_dc&identifier… ↗
metadata API · from radar service eu de
Topics
- From keywords
- Chemistry · Chemistry · Earth & Environmental Science · Earth & Environmental Science · Life Sciences · Life Sciences
- Inferred from text
- Biochemistry and cell biology 73% · Simulation 75%
Provenance · 2 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| RADAR | 10.48606/rtda48r76y1e71cc | 11 d ago | JSON v1 |
| RADAR4Memory | 10.48606/rtda48r76y1e71cc | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · radar service eu de | taxonomy-embedding@1.1.0 | title+keywords+description (73%) |
| concepts[field].local:field:chemistry | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[method].local:method:simulation | enrichment · radar service eu de | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/description |
| license | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/rights |
| publication_date | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| title | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/title |