Table · dataset · 2023
EvaKlimentova/knots_AF
Listed in Hugging Face Datasets
Dataset of knotted and unknotted proteins from AlphaFold This dataset was created based on the whole UniProt database from where protein sequences were obtained, their 3D structure computed with AlphaFold and their topology (knot vs. unknot) determined with Topoly.
Description
The obtained proteins were further processed by clustering with CD-HIT and downsampling to ensure balanced sequence length distribution between knotted and unknotted samples.
The final dataset contains 98528 knotted… See the full description on the dataset page: huggingface.co/datasets/EvaKlimentova/knots_AF.
Links
Get the data
- Hugging Face dataset page huggingface.co/datasets/EvaKlimentova/knots_AF ↗
Gated (manual) - request access on the dataset page
landing page · request access · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/EvaKlimentova/knots_AF ↗
metadata API · from Hugging Face
Topics
- From keywords
- Computer Science & AI
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | EvaKlimentova/knots_AF | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].hf_modality:tabular | source · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].hf_modality:text | source · Hugging Face | connector:huggingface@1.0.0 | |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |