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Data · dataset · 2024

CO1 Amplicon Sequence Variants of bulk arthropod samples (homogenized) collected with Malaise traps from the Insect Biome Atlas project in Sweden

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Description

Amplicon Sequence Variants of 418bp of CO1 from homogenized arthropod community samples collected with Malaise traps from the Insect Biome Atlas project (insectbiomeatlas.org/) in Sweden, as described in the IBA data paper (doi.org/10.1038/s41597-025-05151-0) . This dataset was published via the SBDI ASV portal (asv-portal.biodiversitydata.se/) , and has been updated from 'Metadata only' to 'Occurrence' type.

Occurrence data were compiled from the following IBA Figshare items: Processed ASV data from the Insect Biome Atlas Project v3: (figshare.scilifelab.se/articles/dataset/Processed_ASV_data_from_the_Insect_Biome_Atlas_Project/27202368/3) - cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gz (figshare.scilifelab.se/ndownloader/files/50067528) - spikeins_tax_SE.tsv.gz (figshare.scilifelab.se/ndownloader/files/50067531) Amplicon sequence variants from the Insect Biome Atlas project v6: (figshare.scilifelab.se/articles/dataset/Amplicon_sequence_variants_from_the_Insect_Biome_Atlas_project/25480681/6) - co1_asv_counts_se.tsv.gz (figshare.scilifelab.se/ndownloader/files/46381132) - co1_asv_seqs_se.fasta.gz (figshare.scilifelab.se/ndownloader/files/46381138) The following samples were excluded from this resource due to low read counts: P28409_1377, P28409_1378, P28409_1379, P28409_1380, P28409_1382, P28409_1383, P28410_1334, P28410_1392; or lack of non-zero counts for annotated ASVs: P27361_1636, P28410_1037, P28410_1049.

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Researchdata.seoai:researchdata.se:gbif-sweden-10-15468-awjycd/010 d agoJSON v1
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access_levelsource · researchdata seconnector:researchdata_se@1.0.0
concepts[field].local:field:earth-environmentalmapping · researchdata seconnector:researchdata_se@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata seconnector:researchdata_se@1.0.0
descriptionsource · researchdata seconnector:researchdata_se@1.0.0/metadata/dc/description
licensesource · researchdata seconnector:researchdata_se@1.0.0/metadata/dc/rights
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titlesource · researchdata seconnector:researchdata_se@1.0.0/metadata/dc/title