Data · dataset · 2013
Reconstructing a B-cell clonal lineage: Antigen Receptor Probabilistic Parser (ARPP) software and Clone K/H FASTA files
Listed in DataCite
These files are supplementary to the paper “Reconstructing a B-cell clonal lineage.
Description
I. Statistical inference of unobserved ancestors”, which describes the inference of the unmutated ancestor to a set of clonally related antibody genes. The software that implements the methods described is called ARPP UAI, for antigen receptor probabilistic parser: unmutated ancestor inference. setup.exe is the installer for ARPP UAI.
Double click the icon, and follow the steps as indicated in the installation wizard. It will install the program and create an icon on your desktop. The program requires a windows operating system to run.
Read the rest (2 more)
ARPP QuickStart is a very brief manual describing how to run the program and interpret its output. CL558(CloneK).fasta and GenbankIgHC2(CloneH).fasta are data input files that can be used to test the installation. These are the datasets that were used to generate the results in the paper.
The first of these is a small clone of human kappa sequences, called Clone K in the paper. The latter is a large clone of human heavy chain sequences, called Clone H in the paper.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Title/656793 ↗
landing page · from DataCite
- Repository landing page figshare.com/articles/dataset/Title/656793/4 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.656793 ↗
DOI / persistent id · from DataCite
- DOI doi.org/10.6084/m9.figshare.656793.v4 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Attribution 4.0 International creativecommons.org/licenses/by/4.0/legalcode ↗
license · from DataCite
- IsSupplementTo 10.12688/f1000research.2-103.v1 doi.org/10.12688/f1000research.2-103.v1 ↗
publication · from DataCite
Catalogue records · 4
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.656793.v4 ↗
metadata API · from DataCite
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.656793 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.656793.v4 ↗
catalogue entry · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.656793 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Clinical medicine · Clinical medicine
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Provenance · 2 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.656793 | 13 d ago | JSON v1 |
| DataCite | 10.6084/m9.figshare.656793.v4 | 13 d ago | JSON v1 |
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