Data · dataset · 2014
Low Complexity Regions for mm10
Listed in DataCite
Li showed that variant calling is unreliable in low-complexity regions in human.
Description
These are low-complexity regions for mouse (mm10). Created with the following code (mm10 fasta from UCSC): REF=mm10.fa wget ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/seqclean/seqclean_x86_64.tar.gz tar xzvf seqclean_x86_64.tar.gz ./seqclean/bin/mdust \ $REF -c \ | awk 'BEGIN{OFS="\t"}{ print $1,$3-1,$4 }' | gzip -c - > LCR-mm10.bed.gz
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Low_Complexity_Regions_for_mm10/1180124 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1180124 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Zero v1.0 Universal creativecommons.org/publicdomain/zero/1.0/legalcode ↗
license · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1180124 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1180124 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1180124 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |