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Data · dataset · 2017

Stability metrics for multi-source biomedical data based on simplicial projections from probability distribution distances

Listed in BERD@NFDI Data Portal

Biomedical data may be composed of individuals generated from distinct, meaningful sources.

Description

Due to possible contextual biases in the processes that generate data, there may exist an undesirable and unexpected variability among the probability distribution functions (PDFs) of the source subsamples, which, when uncontrolled, may lead to inaccurate or unreproducible research results. Classical statistical methods may have difficulties to undercover such variabilities when dealing with multi-modal, multi-type, multi-variate data.

This work proposes two metrics for the analysis of stability among multiple data sources, robust to the aforementioned conditions, and defined in the context of data quality assessment. Specifically, a global probabilistic deviation and a source probabilistic outlyingness metrics are proposed. The first provides a bounded degree of the global multi-source variability, designed as an estimator equivalent to the notion of normalized standard deviation of PDFs.

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The second provides a bounded degree of the dissimilarity of each source to a latent central distribution. The metrics are based on the projection of a simplex geometrical structure constructed from the Jensen–Shannon distances among the sources PDFs. The metrics have been evaluated and demonstrated their correct behaviour on a simulated benchmark and with real multi-source biomedical data using the UCI Heart Disease data set.

The biomedical data quality assessment based on the proposed stability metrics may improve the efficiency and effectiveness of biomedical data exploitation and research

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Where it is published

Catalogue records · 1

Topics

From keywords
Economics & Finance
Inferred from text
Cardiovascular disease 65% · Disease 75% · Heart 75%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
BERD@NFDI Data Portalbc8qa-9vz578 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · berd platform deconnector:berd_platform_de@1.0.0
concepts[anatomy].local:anatomy:heartenrichment · berd platform dekeyword-concept-rules@1.0.0title+description (75%)
concepts[disease].local:disease:cardiovascular-diseaseenrichment · berd platform dekeyword-concept-rules@1.0.0title+description (65%)
concepts[disease].local:disease:diseaseenrichment · berd platform dekeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:economics-financemapping · berd platform deconnector:berd_platform_de@1.0.0
descriptionsource · berd platform deconnector:berd_platform_de@1.0.0/metadata/description
publication_datesource · berd platform deconnector:berd_platform_de@1.0.0
titlesource · berd platform deconnector:berd_platform_de@1.0.0/metadata/title
updated_datesource · berd platform deconnector:berd_platform_de@1.0.0