Data · dataset · 2026
Data and analysis code for: Molecular mechanics of smooth muscle contraction and relaxation modulated by caldesmon
Listed in Borealis
Description
This dataset contains the experimental data and analysis scripts supporting the findings presented in the manuscript: "Molecular mechanics of smooth muscle contraction and relaxation modulated by caldesmon." Dataset Components Analysis Code: Provided as a single .zip file containing Python scripts for data extraction, mathematical modeling, and statistical analysis. Includes a detailed ReadMe file. Experimental Data: Uploaded as separate .zip archives (organized by experiment).
These archives contain raw microscopy videos and intermediate .mat files generated by the MATLAB-based IVMA analysis software. Directory Structure & Experimental Descriptions The data and scripts are organized into the following functional directories based on the experimental assays performed: actin_biotinylation_and_CaD: In vitro motility assays (IVMA) investigating the effects of actin biotinylation on velocity and motile fraction in the presence of CaD (Figure S2). analytical_estimation_of_dePhos_rate: Mathematical estimation of myosin dephosphorylation rates with and without caldemson (CaD) (Figure S3). mixture_motility_assays (Parts 1 & 2): Assays using varying ratios of phosphorylated and unphosphorylated myosin with and without CaD.
Read the rest (6 more)
This includes rectangular hyperbola fitting and AIC model comparisons (Figure 5, Table 3, and Table S2).
Note
This data is split into two parts due to file size limits. MLCP_injections_IVMA: IVMA experiments during MLCP-induced myosin dephosphorylation (Figure 4 and Table 2). MLCP_injections_LTA: Laser-trapping (LTA) experiments measuring force-decay and force-rise kinetics, including T_Hold calculations during MLCP-induced relaxation with and without CaD (Figures 1-3, Table 1, and Figure S1).
Technical
Notes
The .mat files included in the data packages were generated using the MATLAB-based In Vitro Motility Analysis (IVMA) software previously described by G. Ijpma et al. (J Muscle Res Cell Motil 39, 153–162, 2018). The Python scripts provided here process those outputs for final statistical analysis and figure generation.
Links
Where it is published
- Dataverse dataset page borealisdata.ca/dataset.xhtml?persistentId=doi%3A10.5683%2FSP3%2FOJQDW8 ↗
landing page · from borealisdata ca
- DOI doi.org/10.5683/sp3/ojqdw8 ↗
DOI / persistent id · from borealisdata ca
Catalogue records · 1
- Dataverse API borealisdata.ca/api/datasets/:persistentId/?persistentId=doi%3A10.5683%2FSP3%2… ↗
metadata API · from borealisdata ca
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Microscopy 75% · Tabular 65%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Borealis | doi:10.5683/SP3/OJQDW8 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[modality].local:modality:microscopy | enrichment · borealisdata ca | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · borealisdata ca | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| description | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /description |
| publication_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| title | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /name |
| updated_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| version_label | source · borealisdata ca | connector:borealisdata_ca@1.0.0 |