Data · dataset · 2011
Genomic data from Adelie penguin ( Pygoscelis adeliae ).
Listed in DataCite
The Adelie penguin ( Pygoscelis adeliae ) is an iconic penguin of moderate stature and a tuxedo of black and white feathers.
Description
The penguins are only found in the Antarctic region and surrounding islands. Being very sensitive to climate change, and due to changes in their behavior based on minor shifts in climate, they are often used as a barometer of the Antarctic.
With its status as one of the adorable and cuddly flightless birds of Antarctica, they serve as an example for conservation, and as a result they are now categorised at low risk for endangerment. The sequence of the penguin can be of use in understanding the genetic underpinnings of its evolutionary traits and adaptation to its extreme environment; its unique system of feathers; its prowess as a diver; and its sensitivity to climate change.
Read the rest (2 more)
We hope that this genome data will further our understanding of one of the most remarkable creatures to waddle the planet Earth. We sequenced the genome of an adult male from Inexpressible Island, Ross Sea, Antartica (provided by David Lambert) to a depth of approximately 60X with short reads from a series of libraries with various insert sizes (200bp- 20kb). The assembled scaffolds of high quality sequences total 1.23 Gb, with the contig and scaffold N50 values of 19 kb and 5 mb respectively.
We identified 15,270 protein-coding genes with a mean length of 21.3 kb.
Links
Where it is published
- Repository landing page gigadb.org/dataset/100006 ↗
landing page · from DataCite
- DOI doi.org/10.5524/100006 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Zero v1.0 Universal creativecommons.org/publicdomain/zero/1.0/legalcode ↗
license · from DataCite
- IsCitedBy 10.1186/2047-217x-3-26 doi.org/10.1186/2047-217x-3-26 ↗
publication · from DataCite
- IsCitedBy 10.1186/2047-217x-3-27 doi.org/10.1186/2047-217x-3-27 ↗
publication · from DataCite
- IsCitedBy 10.1126/science.1251385 doi.org/10.1126/science.1251385 ↗
publication · from DataCite
- IsCitedBy 10.1126/science.1253451 doi.org/10.1126/science.1253451 ↗
publication · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.5524/100006 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.5524/100006 ↗
catalogue entry · from DataCite
Topics
- Inferred from text
- Genome sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.5524/100006 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |