Omics · study · 2026
The effect of aging on gene expression of the African turquiose killfiish optic nerve
Listed in NCBI GEO
White matter dysfunction is a hallmark of brain aging and often precedes overt neurodegeneration, yet the cellular alterations connecting aging to white matter dysfunction remain poorly understood.
Description
The short lived African turquoise killifsh (Nothobranchius furzeri, GRZ-AD) is a valuable genetic model for ageing studies, displaying rapid ageing phenotypes within its four to six-month lifespan. Given the glia-dominant composition of the optic nerve, we reasoned that the killifish optic nerve would provide a suitable model to capture these age-related molecular signatures and gain insight into white matter aging.
We therefore performed bulk RNAseq on optic nerves from young-adult (6-week-old) and aged (18-week-old) killifish. Our findings demonstrate that the aging killifish optic nerve reliably recapitulates the core molecular hallmarks of mammalian CNS aging. This conservation supports the use of the killifish optic nerve to resolve and understand how the CNS immune and glial cell populations contribute to these age-associated changes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE347nnn/GSE347531 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347531 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1530454 ncbi.nlm.nih.gov/bioproject/PRJNA1530454 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE347531 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |