Omics · study · 2026
Prolonged cold exposure enhances regeneration potential in Arabidopsis [ChIP-Seq]
Listed in NCBI GEO
Prolonged cold exposure over winter impacts plant growth and development but its role beyond flowering regulation remains underexplored.
Description
In this study we show that extended cold enhances callus formation and shoot regeneration in Arabidopsis seedlings. This enhancement is mediated by cold-induced AP2/ERF transcription factors C-repeat/DRE-Binding Factor 1 (CBF1), CBF2 and CBF3 which interact with the histone acetyltransferace HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 1 (HAG1).
The CBFs recruit HAG1 to the loci of key regeneration regulators, such as WUSCHEL-RELATED HOMEOBOX 5 (WOX5), to promote their expression via histone acetylation. Our findings thus uncover an epigenetic mechanism by which prolonged cold primes plants for enhanced regeneration, highlighting how environmental cues influence developmental plasticity in plants.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE297nnn/GSE297486 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297486 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1265068 ncbi.nlm.nih.gov/bioproject/PRJNA1265068 ↗
project · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Genome binding/occupancy profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE297486 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |