Omics · study · 2026
ZFP90 deficiency exacerbates high fat diet-induced hepatic transcriptomic remodeling.
Listed in NCBI GEO
RNA-seq identified 1,038 upregulated and 263 downregulated genes (fold-change > 2) in ZFP90 KO livers compared to those in WT livers.
Description
Pathway enrichment analysis revealed that ZFP90 deficiency upregulated programs involved in immunity, inflammatory responses, and lipid metabolism-specific cytokine-cytokine receptor interactions, NF-κB, and chemokine signaling. To explore the mechanisms underlying ZFP90 deficiency-induced hepatic steatosis, we assessed hepatic gene expression based on RNA-seq data.
ZFP90 deficiency increased mRNA levels of genes related to fatty acid uptake, inflammation, and fibrosis, indicating that ZFP90 loss accelerates MASLD progression through integrated inflammatory and metabolic pathways.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324098 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324098 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1433425 ncbi.nlm.nih.gov/bioproject/PRJNA1433425 ↗
project · from NCBI GEO
- PubMed 42514401 pubmed.ncbi.nlm.nih.gov/42514401 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324098 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |