Omics · study · 2026
Effect of depletion of Grina on gene expression during HSV-1 infection of BMDMs
Listed in NCBI GEO
To investigate the role of Grina in HSV-1-induced signaling pathways, we isolated total RNA from Grina-knockout (Grina-KO) BMDMs and their wild-type (WT) controls, with or without HSV-1 infection.
Description
Bone marrow-derived macrophages were generated from Grina-floxed (Grina-fl/fl) and Lyz2-Cre-mediated Grina-KO mice, and were mock-infected or infected with HSV-1 (MOI = 1) for 4 hours. Total RNA was extracted from four biological replicates per condition, representing four experimental groups: WT mock, WT HSV-1, KO mock, and KO HSV-1.
This dataset enables comprehensive identification of Grina-dependent transcriptional responses during HSV-1 infection, providing insights into the crosstalk between Grina-mediated signaling and antiviral innate immunity.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE345nnn/GSE345297 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345297 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1519908 ncbi.nlm.nih.gov/bioproject/PRJNA1519908 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE345297 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |