Omics · study · 2026
Comprehensive Transcriptomic Profiling of Oral Squamous Cell Carcinoma in Indian Patients by RNA Sequencing
Listed in NCBI GEO
Oral squamous cell carcinoma (OSCC) is the most common malignancy of the oral cavity, characterized by extensive molecular alterations that contribute to tumor progression and therapeutic resistance.
Description
To investigate the transcriptomic changes associated with OSCC, RNA sequencing was performed on primary OSCC tissues and matched adjacent non-tumor tissues. Differential gene expression and pathway enrichment analyses identified significant dysregulation of the MAPK signaling pathway, with EGFR and HRAS emerging as key altered genes.
This dataset provides a transcriptomic resource for identifying molecular biomarkers and therapeutic targets in OSCC of Indian patients and supports further investigations into the molecular mechanisms underlying oral carcinogenesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE336nnn/GSE336948 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336948 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1483623 ncbi.nlm.nih.gov/bioproject/PRJNA1483623 ↗
project · from NCBI GEO
- PubMed 42448831 pubmed.ncbi.nlm.nih.gov/42448831 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE336948 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |