Omics · study · 2026
MEK inhibition induces persistent growth arrest through Wnt hyperactivation in KRAS wild-type colorectal cancer
Listed in NCBI GEO
Despite decades of intensive research, colorectal cancer (CRC) remains a leading cause of cancer-related mortality.
Description
Although the canonical EGFR/KRAS/MAPK pathway plays a central role in CRC tumorigenesis, and KRAS/BRAF mutations define only a subset of tumors, the fate of KRAS wild-type CRC cells surviving MEK inhibition remains poorly understood. Using patient-derived organoids (PDOs) and tissue samples, we detected heterogeneous MAPK pathway activity and found that MEK inhibition induces sustained growth arrest that persists after drug withdrawal and even in the presence of EGF.
This low-proliferative state was accompanied by a transcriptional shift towards a stem cell–like program characterized by high Wnt pathway activity, without evidence of increased senescence and without elevated expression of genes associated with high-plasticity tumor cell state. Importantly, we proved that Wnt hyperactivation recapitulates the effects of MEK inhibition in surviving KRAS wild-type PDOs, suggesting a functional link between MEK inhibition and Wnt-driven reprogramming.
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Whereas repeated MEK inhibitor treatment had no additional effect, surviving Wnt-high organoids displayed increased sensitivity to alternative drugs, including HSP90 and BCLxL inhibitors. In parallel, we found that extracellular matrix composition can modulate treatment response, and the accumulation of collagen-I significantly reduces PDO survival under MEK inhibition, whilst fibroblasts did not alter short-term effects in co-cultures.
Collectively, these findings show that MEK inhibition in KRAS wild-type CRC induces long-term growth arrest with Wnt hyperactivation, rendering cells unresponsive to repeated MEK inhibition while exposing therapeutic and context-dependent vulnerabilities, providing a rationale for sequential treatment strategies.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE329nnn/GSE329052 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329052 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1457448 ncbi.nlm.nih.gov/bioproject/PRJNA1457448 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE329052 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |