Omics · study · 2026
Systemic degradation of repressive transcription factors gates gene expression and cell fate specification [CUT&RUN]
Listed in NCBI GEO
While proteasomes are best known for eliminating defective proteins or turning off signaling path-ways, they also enable many cellular activities.
Description
Critical among these, proteasomes allow cells to initiate gene expression, but underlying targets and regulatory mechanisms remain poorly under-stood. Here, we report that proteasomes drive systemic degradation of repressive transcription factors to constantly eject co-repressors of the TLE family from chromatin and thus broadly free transcription start sites for activator binding.
Systemic transcription factor degradation depends on the E3 ligase SCFFBXL14, which gains substrate access through constitutive complex formation with TLE co-repressors. While energetically costly, cycling co-repressors on and off chromatin is essential for stem cells to translate developmental cues into lineage-specific gene expression, a regulation that is disrupted by cancer mutations in TLE1 that impair SCFFBXL14 recognition.
Read the rest (1 more)
We conclude that proteasomes enable gene expression and cell differentiation by driving systemic transcription factor degradation and thereby establishing dynamic co-repressor function.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327699 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327699 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1451885 ncbi.nlm.nih.gov/bioproject/PRJNA1451885 ↗
project · from NCBI GEO
- PubMed 42367945 pubmed.ncbi.nlm.nih.gov/42367945 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327699 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |