Text · study · 2026
USP9X deubiquitinase regulates pluripotency status by bridging ESRRB transcriptional activity and cell metabolism
Listed in NCBI GEO
USP9X regulates the differentiation and pluripotency status of embryonic stem cells.
Description
We have characterized USP9X-regulated genes by a transcriptional profiling of embryonic stem cells (V6.5) electroporated with shRNA vectors (pHYPER) targeting USP9X or control. The dataset contains expression data from 3 samples of ESC V6.5 electroporated with pHYPER-USP9X and 3 samples from ESC V6.5 electroporated with pHYPER empty.
The datasets are used to identify differentially expressed genes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161005 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161005 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA675095 ncbi.nlm.nih.gov/bioproject/PRJNA675095 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by array · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE161005 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-array | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |