Omics · study · 2026
RNA-seq analysis of human glioma LN229 cells treated with 17-hydroxyjolkinolide B
Listed in NCBI GEO
Glioma is a highly aggressive brain tumor for which effective therapeutic options remain limited.
Description
Although natural products represent an important source of anticancer agents, the anti-glioma activity of 17-hydroxyjolkinolide B (HJKB), a diterpenoid derived from Euphorbia fischeriana, remains poorly understood. Here, screening of 280 natural compounds identified HJKB as an active inhibitor of glioma cell growth.
HJKB suppressed the proliferation, migration, and invasion of LN229 and U87 cells, induced G1-phase cell-cycle arrest, and inhibited LN229 xenograft growth in vivo. Transcriptomic profiling identified 5321 differentially expressed genes, with prominent enrichment in chromosome segregation, DNA replication, and cell-cycle checkpoint processes. Integration of transcriptomic and network pharmacology results identified 36 overlapping targets and prioritized CASP3, CDK2, MDM2, and EGFR as candidate molecules.
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Molecular docking suggested potential interactions between HJKB and these proteins. LiP-SMap further revealed altered local proteolytic accessibility of an EGFR-derived peptide within extracellular domain I, nominating EGFR as a candidate HJKB-responsive protein. HJKB treatment was also accompanied by transcriptional changes in several candidate genes.
Collectively, these findings establish the in vitro and in vivo anti-glioma activity of HJKB and associate its pharmacological effects with cell-cycle dysregulation, while supporting further investigation of EGFR as a candidate HJKB-responsive protein.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE344nnn/GSE344508 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344508 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1514909 ncbi.nlm.nih.gov/bioproject/PRJNA1514909 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE344508 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |