← Search

Data · dataset · 2024

Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes

Listed in Teesside University Research Data Repository

This dataset contains the following materials: 1.

Description

ZIP file of txt files. PATRIC Genome IDs and AMR phenotypes, with '1' indicating resistance and '0' indicating susceptibility, for 78 single-species-antibiotic datasets. 2.

ZIP file of JSON files. 223 (78+67+78) sets of random folds, phylogeny-aware folds, and homology-aware folds for 78 single-species-antibiotic datasets. Nine sets of homology-aware folds for nine multi-antibiotic datasets, each corresponding to one of nine species. A set of homology-aware folds for evaluating Aytan-Aktug control multi-species model and cross-species model.

Read the rest (1 more)

Nine sets of homology-aware folds for evaluating the Aytan-Aktug leave-one-species-out cross-species model. 3. ZIP file of PDF files. Phylogenetic trees generated by Geno2Pheno for 10 species (including 67 species-antibiotic combinations), annotated with phenotypes and the cross-validation folds for phylogeny-aware and random folds, respectively.

Links

Where it is published

Catalogue records · 1

Topics

Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
Teesside University Research Data Repositoryoai:data.mendeley.com/6vc2msmsxj.27 h agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[field].anzsrc:field:310509mapping · researchdata tees ac ukvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:group:3102mapping · researchdata tees ac ukvocabulary-mapper@1.0.0keywords['Computational Biology']
concepts[field].anzsrc:group:4611mapping · researchdata tees ac ukvocabulary-mapper@1.0.0keywords['Machine Learning']
concepts[field].local:field:computer-science-aimapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
descriptionsource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/description
licensesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/rights
publication_datesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0
titlesource · researchdata tees ac ukconnector:researchdata_tees_ac_uk@1.0.0/metadata/dc/title