263 datasets

NCL Data2026 · dataset

<p dir="ltr">VCF file used in Rocchetti et al. 2026 to perform Landscape genomics on 208 chickpea accessions.</p>

NCL Data2026 · dataset

<p dir="ltr">The Ankole is a long-horned Sanga cattle breed (Bos taurus africanus) native to Uganda and widely distributed across sub-Saharan Africa and beyond. It is valued for disease and parasite tolerance, adaptation to the equatorial environment and its unique cultural significance. This data relates to the generation and annotation of a haplotype-resolved, chromosome-level genome assembly us

NCL Data2026 · dataset

<p dir="ltr">This dataset contains the complete chloroplast genome (plastome) sequences and associated annotations of 53 Solanaceae species analyzed in the study "Comparative plastome analyses of early-diverging Solanaceae reveal structural evolution, codon usage bias, and episodic diversifying selection". The dataset consists of: 7 newly de novo assembled plastomes spanning early-diverging to der

NCL Data2026 · dataset

<p dir="ltr">Pioneer transcription factors specify cell identity by targeting silent chromatin and initiating lineage-specific programming, yet their roles in human erythropoiesis remain incompletely defined. Here, through integrated multi-omics analysis, we identify TAL1 as a bona fide pioneer transcription factor that coordinates a multi-layered chromatin remodeling program essential for erythro

NCL Data2026 · dataset

<p dir="ltr"><b>ConnecTick project</b> (<i>PID2024-162238NB-100</i>) recognizes the challenges that ticks present as carriers of tickborne pathogens and reservoirs of antibiotic-resistant bacteria (ARBs) and related genes (ARGs). The primary goal of this project is to investigate how the environmental microbiome—comprising host skin and soil microbiomes—affects the composition and diversity of the

NCL Data2026 · dataset

<p dir="ltr">This dataset contains genome annotation files for <i>Dermestes undulatus</i>, including structural and functional annotations. It comprises GFF3/GTF files, predicted protein and CDS sequences, functional annotations based on NR, Swiss-Prot, KEGG, Gene Ontology (GO), InterProScan, and Pfam, as well as non-coding RNA and repetitive element annotations.</p>

NCL Data2026 · dataset

<p dir="ltr">VCF file used in Rocchetti et al. 2026 to perform population genetics analysis on532 chickpea accessions.</p>

Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Genome sequencing

MRSP WGS-AST boundary benchmark: reproducibility package (revision version). Reproducibility package for the Microbial Genomics manuscript MGEN-D-26-00487 (de Souza and Santoro): Staphylococcus pseudintermedius whole-genome sequencing antimicrobial susceptibility boundary benchmark with a training-only-dictionary pangenome projection, restricted-shell model inputs, frozen prediction chains and out

Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Crystal structure

<p dir="ltr">Oomycete plant pathogens threaten global food security, agriculture, and environmental health. Molecular identification of oomycetes typically relies on short high-copy number DNA markers (~500-bp or less), such as ribosomal DNA or mitochondrial cytochrome oxidase subunits, but these markers may lack species- or subspecies-level resolution due to factors like insufficient nucleotide v

figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue · restricted

<p dir="ltr">Here, we investigated population structure and genetic diversity in the canopy-forming kelp Laminaria hyperborea across 13 sites along the Norwegian coast (58–70°N) using 7,734 single nucleotide polymorphisms generated via double-digest restriction site-associated DNA sequencing (ddRAD-seq). To create this file, we processed ddRAD-seq reads using a reference-based approach. After proc

DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Extreme hypersaline environments impose overlapping physiochemical stresses on microbial communities, but whether geographically distant systems develop common taxonomic and genomic features remains poorly understood. Here, we reconstructed 164 medium- to high-quality metagenome-assembled genomes from Great Salt Lake sediments and compared them with >7,000 publicly available genomes r

figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This dataset provides the genome assembly and annotation data supporting the article "Chromosome-scale reference genome assembly of an Aokubi Raphanus sativus doubled haploid line" (Scientific Data).</p><p dir="ltr">Related public records: BioProject PRJDB40705; BioSample SAMD01836765; raw Oxford Nanopore reads, DDBJ Sequence Read Archive DRR1048479; genome assembly and gene annotatio

figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This dataset contains genotype and phenotype data from a genome-wide association study (GWAS) and Fst-based selection signature analysis of body weight in 435 Beagle dogs (190 males and 245 females). Whole-genome resequencing was performed on the DNBSEQ-T7 platform at approximately 5× depth, yielding 162,133 SNPs after quality control. The dataset includes PLINK binary genotype files

Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Crystal structure

<p dir="ltr">This dataset contains the haplotype-resolved genome assembly and annotation of <i>Polygonatum cyrtonema</i> (Huangjing), a traditional Chinese medicinal and edible plant. The assembly comprises two phased haplotypes, totaling approximately 14.38 Gb across 22 pseudomolecules. The dataset includes the following files:</p><ul><li>Genome sequence (FASTA)</li><li>Gene annotation files (GFF

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Plastome of <i>Peucedanum japonicum </i>Korea 2</p>

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Plastome of <i>Peucedanum japonicum </i>Korea 3</p>

ZivaHub + Deakin Research Online + DMU Figshare2026 · dataset

<p dir="ltr">The Dynamic Consent Research Snapshot describes Australian Genomics’ development of CTRL, an online consent and participant-engagement platform based on the principles of dynamic consent. It enables research participants to make more detailed consent choices, change or withdraw consent over time, access study information, communicate with researchers, and stay engaged with their resea

ZivaHub + Deakin Research Online + DMU Figshare2026 · Sequencing

Introduction: Microbial keratitis (MK) is a serious infection of the cornea and a leading cause of monocular blindness globally. Incidence rates of MK are increasing due to a rise in associated risk factors such as contact lens use. To guide selection of the most appropriate antimicrobial therapy and ensure the best possible visual outcome for the patient, it is critical for ophthalmologists to ra

ZivaHub + Deakin Research Online + DMU Figshare + UCL Research Data Repository2026 · dataset · unknown

Prostate cancer is highly heterogeneous, with the potential for multifocality with phenotypically and genetically distinct tumour foci. Additionally, cellular heterogeneity has the ability to harbour phenotypically diverse cancer cell types. Prostate cancer needs to be explored across different levels to enhance our understanding of disease progression. This can be achieved through investigating p

ZivaHub + Deakin Research Online + DMU Figshare2026 · dataset

<p dir="ltr">A thesis submitted in total fulfilment of the requirements for the degree of Doctor of Philosophy to the School of Agriculture, Biomedicine and Environment, La Trobe University, Victoria, Australia.</p>

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This dataset provides genome annotation resources for Propomacrus davidi to support gene discovery, functional interpretation, and comparative genomic research. The reference genome was generated from a single wild-collected female larva using PacBio HiFi sequencing and Illumina Hi-C data. Assembly was performed using hifiasm, followed by haplotypic redundancy reduction with purge_dup

ZivaHub + Deakin Research Online + DMU Figshare2026 · dataset · unknown

Antimicrobial resistance (AMR) is becoming an increasing burden on society. AMR phenotype is usually defined using laboratory-based techniques. However, laboratory-based assays can be time-consuming. Using computational techniques, we might be able to better identify the relationship between AMR phenotype and the whole genome. AMR gene identification tools are efficient at predicting the AMR genot

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This study was developed to investigate how MPAs are contributing to shaping the evolutionary history of Red Roman across their core distribution range. This research utilises VCF files generated with BCFtools from whole-genome sequences of the Red Roman seabream, obtained through DNBSEQ sequencing technology. The goal was to conduct genomic analyses to support the conservation of the

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This dataset contains supplementary genomic resources generated for the Gansu red deer (Cervus elaphus kansuensis). The deposited files include the assembled mitochondrial genome, genome annotation files, and predicted protein sequences derived from the chromosome-level genome assembly.</p>

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This is a version of the pseudotime data exported by the <a href="https://github.com/SONGDONGYUAN1994/PseudotimeDE">PseudotimeDE package</a>, converted to AnnData format.</p>