Excel · study · 2026
Prenatal Black Carbon Exposure Is Associated with Neonatal IL-17/TNF Signaling and Altered Innate Immune Gene Expression Profiles in Cord Blood
Listed in NCBI GEO
Combustion-derived black carbon (BC) can cross the placenta and reach the fetus.
Description
In this prospective birth-cohort study nested within Born in Bradford’s Better Start, BC particles were quantified in umbilical cord blood using femtosecond pulsed-laser microscopy. Cord-blood leukocyte RNA was profiled using the BioSpyder TempO-Seq whole-transcriptome assay.
For 83 newborns with complete data, log₁₀-transformed BC concentrations were related to genome-wide gene expression using confounder-adjusted linear mixed-effects models, and gene set enrichment analyses were performed for KEGG pathways and Gene Ontology terms. Higher fetal BC burden was associated with IL-17 and TNF/NF-κB pathway activation, increased expression of sialic-acid-binding receptors, and decreased expression of neutrophil defensins and metabolic genes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE314nnn/GSE314374 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314374 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1390777 ncbi.nlm.nih.gov/bioproject/PRJNA1390777 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Microscopy 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE314374 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:microscopy | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |