Omics · study · 2026
Sublethal Fipronil and Cyfluthrin Exposure Induces Locus-Specific DNA Hypomethylation at Stress, Immune, and Xenobiotic-Response Genes in Adult Zebrafish
Listed in NCBI GEO
Aquatic organisms are exposed to pesticide residues that can lead to non-lethal molecular effects.
Description
This study investigated DNA methylation at toxicologically relevant loci in adult zebrafish. Fish were exposed to low and high concentrations of each compound for 7 days under semi-static conditions.
We performed targeted bisulfite amplicon sequencing at six loci representing stress response (hsp70.1, hsp70.2, and hsp70.3), immune function (b2m), xenobiotic metabolism (cyp1a), and cytoskeletal reference function (actb2). Following amplicon-level coverage filtering, CpG methylation was analyzed using the "Dispersion Shrinkage for Sequencing" (DSS) beta-binomial model. Among the 582 CpG sites tested across four different exposure comparisons, 178 differentially methylated loci (DMLs) were identified at an FDR<0.05, revealing a predominant trend: 177 (99.4%) of the DMLs in exposed fish were found to be hypomethylated compared to the control group.
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The majority of the DMLs were located within the hsp70 paralog cluster; notably, hsp70.2 exhibited a response across both the compounds and the dose levels. b2m exhibited marked hypomethylation across all comparisons, including under the non-monotonic dose-response relationship associated with fipronil exposure. cyp1a hypomethylation was observed at significant levels with high doses of cyfluthrin, consistent with a xenobiotic response signal dependent on both the compound and the dose.
In contrast, actb2 showed minimal differential methylation, supporting the locus-specific nature of the response. Eighteen CpG sites corresponding to the hsp70.2 and b2m genes were found to be hypomethylated across all four exposure comparisons. The results indicate that exposure can induce regulated and locus-specific DNA methylation changes in adult zebrafish, particularly in genes associated with stress response, immunity, and xenobiotic metabolism.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE348nnn/GSE348360 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348360 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1533526 ncbi.nlm.nih.gov/bioproject/PRJNA1533526 ↗
project · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Methylation profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Genetics 73% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE348360 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (73%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:methylation-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |