Omics · study · 2026
Single-cell TCR Profiling in Left Atria Identifies Complement Pathway Involvement in Atrial Fibrillation
Listed in NCBI GEO
Atrial fibrillation (AF) is the most prevalent arrhythmia and is strongly associated with stroke, heart failure, and increased mortality.
Description
However, the role of T cells in AF pathogenesis remains unclear. In this study, we aimed to characterize the detailed landscape and clonal expansion of T cells using single-cell TCR sequencing, and validate our findings via O-link proteomics in plasma.
Analysis of left atrial tissues from eight AF patients identified five CD4+ T cells, six CD8+ T cells, and gamma delta T cells based on canonical gene expression markers. Notably, we observed clonal expansion of resident memory and cytotoxic T cells. CellChat analysis highlighted complement signaling–mediated interactions between T cells and fibroblasts.
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Furthermore, proteomics in plasma using the Olink platform confirmed enriched complement activation in non-paroxysmal AF compared to paroxysmal AF. These findings suggest that activation of complement pathway between T cells and fibroblasts contributes to atrial remodeling and may serve as a potential therapeutic target for AF.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE294nnn/GSE294456 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294456 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1249487 ncbi.nlm.nih.gov/bioproject/PRJNA1249487 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Heart 75% · Mass spectrometry 65% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE294456 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:mass-spectrometry | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |