Omics · study · 2026
The chromatin assembly factor CHAF1b functions as an epigenetic amplifier of RORγt to promote Th17 pathogenicity and autoimmunity
Listed in NCBI GEO
Th17 cells are double-edged regulators of mucosal defense and autoimmune inflammation, yet the chromatin mechanisms distinguishing their pathogenic state remain elusive.
Description
Here, we identify CHAF1b, a core subunit of the chromatin assembly factor CAF-1 complex, as an essential epigenetic amplifier of RORgt-driven transcription in Th17 cells. CHAF1b expression is selectively induced during Th17 differentiation and elevated in inflamed tissues from mice with experimental autoimmune encephalomyelitis (EAE) and colitis.
Th17-specific deletion of Chaf1b markedly reduces IL-17A/F expression, alleviates neuroinflammation and colonic pathology, and reprograms the Th17 effector transcriptome without affecting lineage commitment. Mechanistically, CHAF1b physically associates with RORgt and co-occupies enhancer regions at the Il17a–Il17f locus, promoting chromatin accessibility and enhancer activation. Multi-omics analyses reveal that CHAF1b reinforces RORgt-driven enhancer–promoter interactions and maintains a proinflammatory Th17 epigenome.
Read the rest (1 more)
In human Th17 cells, CHAF1b similarly governs IL-17 production, and its expression declines in patients with inflammatory bowel disease following effective therapy. Collectively, these findings uncover CHAF1b as a chromatin-anchored signal amplifier that couples RORgt activity to autoimmune inflammation, highlighting its potential as a therapeutic target for Th17-mediated disorders.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE326nnn/GSE326921 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326921 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1447944 ncbi.nlm.nih.gov/bioproject/PRJNA1447944 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE326921 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |