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Omics · dataset · 2026

Differential expression results for behavioural profile and mitochondrial lineage in <i>Salamandra salamandra</i> larvae

Listed in ZivaHub and HKU DataHub and figshare and Loughborough Research Repository and UP Research Data Repository — shown once because both records carry DOI 10.6084/m9.figshare.34018317.v1

Description

<p dir="ltr">This dataset contains the complete annotated differential-expression results used in the study “Transcriptomic correlates of dispersal-related behavioural profiles in <i>Salamandra salamandra</i> larvae across a mitochondrial contact zone”.</p><p dir="ltr">Differential expression was analysed at the Corset-cluster level using RNA-seq data from ten <i>Salamandra salamandra</i> larvae classified by mitochondrial lineage and behavioural profile.

The file includes the results for both contrasts analysed in the study: behavioural profile (fast vs slow) and mitochondrial lineage (northern vs southern).</p><p dir="ltr">For each Corset cluster, the dataset reports differential-expression statistics together with available functional annotation, including protein descriptions and functional-category assignments where available. Both shrunken and unshrunken log2 fold-change estimates are included.</p><p dir="ltr">The behavioural contrast identified 403 differentially expressed clusters, whereas the unfiltered mitochondrial-lineage contrast identified 589.

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Clusters of mitochondrial origin were subsequently excluded from biological interpretation of the lineage contrast because sequence divergence from the single de novo reference may affect mapping efficiency. After this exclusion, 374 lineage-associated clusters remained for biological interpretation.</p><p dir="ltr">This dataset corresponds to Supplementary Datafile 1 of the associated manuscript.</p>

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Where it is published

Catalogue records · 1

Topics

Provenance · 5 source records, 47 field assertions
SourceKeyLast seenRaw
ZivaHuboai:figshare.com:article/340183178 d agoJSON v1
HKU DataHuboai:figshare.com:article/340183177 d agoJSON v1
figshareoai:figshare.com:article/340183177 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/340183177 d agoJSON v1
UP Research Data Repositoryoai:figshare.com:article/340183176 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0
concepts[field].anzsrc:field:310204mapping · figshare comvocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310204mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310204mapping · researchdata up ac zavocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310204mapping · zivahub uct ac zavocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310204mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].local:field:astronomymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:economics-financemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:engineeringmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:engineeringmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:engineeringmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:humanitiesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].local:field:life-sciencesmapping · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:materials-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[modality].local:modality:rna-seqmapping · figshare comvocabulary-mapper@1.0.0keywords['RNA-seq']
concepts[modality].local:modality:rna-seqmapping · datahub hku hkvocabulary-mapper@1.0.0keywords['RNA-seq']
concepts[modality].local:modality:rna-seqmapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['RNA-seq']
concepts[modality].local:modality:rna-seqmapping · zivahub uct ac zavocabulary-mapper@1.0.0keywords['RNA-seq']
concepts[modality].local:modality:rna-seqmapping · researchdata up ac zavocabulary-mapper@1.0.0keywords['RNA-seq']
descriptionsource · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0/metadata/dc/description
licensesource · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0/metadata/dc/rights
publication_datesource · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0
titlesource · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0/metadata/dc/title