Omics · study · 2026
ATR inhibition affects RNA Polymerase II transcription during S-phase
Listed in NCBI GEO
Transcription and replication are the key processes in cell growth and division that utilize DNA as their template.
Description
Concurrently, conflicts between the two processes increase genome instability levels. Evidence in the literature indicate that transcription and replication can however coexist, suggesting the requirement for cellular mechanisms to avoid reciprocal interference.
To identify factors important in this regulatory process, we performed a screening of known DNA damage response proteins. Among the factors assessed, we found that specifically inhibition of ATR affected cells’ ability to replicate long transcribed genes, impacting also on cells’ ability to transcribe these genes. However, ATR activity was also required later during S-phase the control transcription activity on all genes.
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Dissecting which of ATR’s roles is important for this process, we uncovered that SMARCAL1 is likewise required to regulate genes transcription later during S-phase. Altogether, we have uncovered how DNA damage response factors are required to support the replication of transcribed regions, but also how their role extends to regulate also genes transcription levels during S-phase.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE269nnn/GSE269242 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269242 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1120799 ncbi.nlm.nih.gov/bioproject/PRJNA1120799 ↗
project · from NCBI GEO
- PubMed 42472121 pubmed.ncbi.nlm.nih.gov/42472121 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Genetics 70%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE269242 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |