Omics · study · 2026
Clonal Hematopoiesis Drives Fibrotic Remodeling of the Bone Marrow Microenvironment [dataset 1]
Listed in NCBI GEO
Clonal hematopoiesis of indeterminate potential (CHIP) is associated with aging, inflammation, and increased risk of hematologic malignancy, yet its impact on the human bone marrow (BM) microenvironment remains unclear.
Description
Using single-cell transcriptomic and histologic profiling of freshly isolated human BM, we show that CHIP profoundly remodels the niche through fibroblast expansion and early fibrotic transformation. CHIP carriers exhibited myeloid-biased hematopoiesis, broad enrichment of inflammatory signaling, and metabolic reprogramming of CD4⁺ and CD8⁺ T cells, with CD8⁺ T cells emerging as key sources of TNFα.
Strikingly, fibroblast expansion occurred irrespective of mutational subtype and was characterized by transcriptional programs analogous to cancer-associated fibroblasts (CAFs). These cells demonstrated signaling interactions with hematopoietic and immune compartments through collagen-integrin adhesion pathways as well as IL-6 and TGFβ cytokine networks. Histologic validation confirmed reticulin and collagen deposition, establishing a pre-fibrotic niche state.
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These findings position fibroblast-driven remodeling as an early hallmark of CHIP, linking inflammation, fibrosis, and clonal persistence, and highlight antifibrotic strategies as potential avenues to intercept malignant evolution.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE308nnn/GSE308956 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308956 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1333479 ncbi.nlm.nih.gov/bioproject/PRJNA1333479 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE308956 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |