Data · dataset · 2022
Cancer segmentation by entropic analysis of ordered gene expression profiles
Listed in ScienceDB
Data files for the article "Cancer segmentation by entropic analysis of ordered gene expression profiles¨1) Data files with a .proc extension are the unsorted files for the class sequence.
Description
Data files with a .sort extensions are the sorted files for the class sequence. Data files with the .rnd extension are the randomized files for the class sequence.
Three classes are defined for under-, over-, and normal-expressed genes, to the first the value 2 is assigned, to the second, the value 1 is assigned, and 0 otherwise. Primary gene expression data were taken from the TCGA portal (portal.gdc.cancer.gov/)2) Data files with LZ76 extension correspond to the output files of the entropy estimation via Lempel-Ziv factorization. 3) distance_matrix.zip file is the distance matrix for each cancer type.
Read the rest (1 more)
The file starts with the number of entries. Then each line is an entry that starts with a sample name which is irrelevant except that, normal tissue entries have a name starting with Normal, and cancer tissue entries have a name starting with Cancer. The distance values follows in the same order as the listed entries.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.06470 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Medicine & Health · Social Science
- Inferred from text
- Cancer 75% · Oncology and carcinogenesis 73%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.06470 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3211 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (73%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |