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Data · dataset · 2022

Cancer segmentation by entropic analysis of ordered gene expression profiles

Listed in ScienceDB

Data files for the article "Cancer segmentation by entropic analysis of ordered gene expression profiles¨1) Data files with a .proc extension are the unsorted files for the class sequence.

Description

Data files with a .sort extensions are the sorted files for the class sequence. Data files with the .rnd extension are the randomized files for the class sequence.

Three classes are defined for under-, over-, and normal-expressed genes, to the first the value 2 is assigned, to the second, the value 1 is assigned, and 0 otherwise. Primary gene expression data were taken from the TCGA portal (portal.gdc.cancer.gov/)2) Data files with LZ76 extension correspond to the output files of the entropy estimation via Lempel-Ziv factorization. 3) distance_matrix.zip file is the distance matrix for each cancer type.

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The file starts with the number of entries. Then each line is an entry that starts with a sample name which is irrelevant except that, normal tissue entries have a name starting with Normal, and cancer tissue entries have a name starting with Cancer. The distance values follows in the same order as the listed entries.

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Cancer 75% · Oncology and carcinogenesis 73%
Provenance · 1 source records, 13 field assertions
SourceKeyLast seenRaw
ScienceDB10.57760/sciencedb.064709 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · scidb cnconnector:scidb_cn@1.0.0
concepts[disease].local:disease:cancerenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].anzsrc:group:3211enrichment · scidb cntaxonomy-embedding@1.0.0title+keywords+description (73%)
concepts[field].local:field:earth-environmentalmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:engineeringmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:humanitiesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:life-sciencesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:medicine-healthmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:social-sciencemapping · scidb cnconnector:scidb_cn@1.0.0
descriptionsource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/description
licensesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/rights
publication_datesource · scidb cnconnector:scidb_cn@1.0.0
titlesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/title