Omics · study · 2026
Identification and validation of an ESR1 Y537S mutant-specific enhancer and its downstream target IGFBP3 [ATAC-seq]
Listed in NCBI GEO
Endocrine therapy that inhibits estrogen receptor (ER) mediated signaling is a cornerstone treatments for ER positive breast cancer, a subtype that constitutes more than 75% of all breast cancer cases.
Description
However, resistance to endocrine therapy occurs in a significant proportion of patients, and hotspot missense point mutations of the ESR1 gene that codes ER-alpha is one of the major underlying mechanisms for such resistance.
While recent research has provided novel insights into the role and activities of mutant ER, effective therapeutics that can overcome this mutant ER-mediated endocrine resistance remain elusive. Employing circulating tumor cell line carrying the ESR1 Y537S mutation derived from a metastatic breast cancer patient, along with genetically engineered breast cancer cell lines harboring the same mutation, our analysis identified a novel enhancer region that is specifically bound by Y537S mutant ER.
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Deletion of this enhancer region resulted in reduced cell proliferation and adhesion in vitro, decreased tumorigenicity in vivo, and enhanced sensitivity to fulvestrant in Y537S ER-mutated cells. We subsequently identified IGFBP3 as a downstream target of this enhancer and validated its role in some of the Y537S ER-associated phenotypes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE333nnn/GSE333366 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333366 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1470759 ncbi.nlm.nih.gov/bioproject/PRJNA1470759 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE333366 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |