Omics · study · 2026
Inhibition of a corrupted embryonic developmental regulator reverses colon cancer to a normal-like state [TAF10 ChIP-seq]
Listed in NCBI GEO
Transforming the malignant characteristics of cancer cells instead of killing them is one potential strategy to overcome limitations associated with cancer therapies intended to induce cancer cell apoptosis.
Description
A systems approach could identify mechanisms to drive the reversion of cancer cells into normal-like cells. Here, we identify the transition state between normal and cancer cells in colon and show that knockdown of TATA-box-binding-protein-associated Factor 10 (TAF10) can rewire the gene regulatory network, resulting in reversion of colon cancer cells into normal-like cells.
Intriguingly, TAF10 is essential in embryonic development and should be inactivated after development, but is instead hijacked during colon cancer tumorigenesis and remains as a potential reversion switch of the underlying complex molecular network.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341346 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341346 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1501381 ncbi.nlm.nih.gov/bioproject/PRJNA1501381 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 71% · Cancer 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341346 | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |