Omics · study · 2026
Loss of wbp11 Causes Multi-System Developmental Defects: A Zebrafish Model of VACTERL Association
Listed in NCBI GEO
VACTERL association is a congenital disorder characterized by multi-system malformations, primarily affecting the vertebrae, heart, kidneys, trachea and esophagus, as well as the limbs.
Description
Although WBP11 has been identified as a candidate causative gene, existing mouse models fail to fully recapitulate the multi-system phenotypes observed in patients, thereby limiting a comprehensive understanding of the pathogenic mechanisms underlying this gene.
In this study, we established and systematically characterized a wbp11 knockdown zebrafish model to investigate the role of wbp11 in early development and its relevance to VACTERL association. Bioinformatics analysis revealed that zebrafish wbp11 shares high amino acid sequence identity with human WBP11, is broadly expressed during early embryogenesis, peaks at the gastrula stage, and displays relatively higher signal intensity in the head, skeletal muscle, and heart.
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Western blot analysis confirmed that injection of wbp11 morpholino (MO) markedly reduced Wbp11 protein levels, resulted in significantly increased morphological abnormalities, and caused a general delay in embryonic development. Phenotypic characterization demonstrated that wbp11 knockdown leads to multi-system developmental defects, including cardiac malformations, pericardial edema and impaired heart looping; vascular defects, underdeveloped mesenteric vessels and reduced cranial vasculature; spinal curvature and aberrant notochord structure; various fin hypoplasia phenotypes with reduced fin sizes; and transcriptional dysregulation of kidney developmental marker genes.
These phenotypes closely resemble the core clinical features of VACTERL association, demonstrating that loss of Wbp11 can induce multi-system congenital anomalies in a vertebrate model. Transcriptomic and differential alternative splicing analyses, together with molecular biological assessments, further revealed significant dysregulation of genes associated with cardiac function, angiogenesis, skeletal patterning, fin development, and kidney development, thereby providing molecular insights into the observed morphological defects.
Collectively, this study establishes a wbp11-MO mediated knockdown zebrafish model, demonstrates its capacity to partially recapitulate key features of VACTERL association, and provides a powerful platform for dissecting the underlying molecular mechanisms and exploring potential therapeutic interventions for this disorder.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341689 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341689 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1503477 ncbi.nlm.nih.gov/bioproject/PRJNA1503477 ↗
project · from NCBI GEO
- PubMed 42625817 pubmed.ncbi.nlm.nih.gov/42625817 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Heart 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341689 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |