Omics · study · 2026
Epigenetic Disordering Drives Stemness, Senescence Escape and Tumor Heterogeneity [WGBS]
Listed in NCBI GEO
Tumor heterogeneity is the substrate for tumor evolution and the linchpin of treatment resistance.
Description
The widespread epigenome repatterning that characterizes most cancers can generate cells with diverse identities and malignant features; however, how this occurs is not known. We show that high levels of the epigenetic regulator and oncogene UHRF1 in zebrafish hepatocytes rapidly induce disordering of the DNA methylome, loss of heterochromatin, and DNA damage, resulting in cell cycle arrest, atm-tp53-mediated senescence, and acquisition of stemness.
Most cells are eliminated, but some in which UHRF1 expression is reduced transition to proliferation-competent cells, generating heterogeneous tumors comprised of cancer cells with progenitor-like features and persistently senescent cells that serve as reservoirs for new cancer cells. The gene signature from UHRF1-driven zebrafish tumors defines an immature and aggressive hepatocellular carcinoma subclass in humans. This defines epigenetic disordering, stemness, and senescence escape as requisite steps in developing aggressive and immature liver tumors.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE303nnn/GSE303273 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303273 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1294733 ncbi.nlm.nih.gov/bioproject/PRJNA1294733 ↗
project · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Methylation profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE303273 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:methylation-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |